PROJECT INFORMATION
GOLD Project ID
Gp0239019  
Project Name
Methanosarcina acetivorans C2A transcriptome - LK82  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Methanosarcina acetivorans C2A transcriptome - LK82
NCBI BioProject ID 410622
NCBI BioProject Accession PRJNA410622
NCBI Locus Tag
  
NCBI BioSample Accession SAMN10342543
PI Zaida Luthey-Schulten
Added By JGI automated process on 2017-09-19
Last Modified By JGI automated process on 2019-04-28
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Methanosarcina acetivorans C2A transcriptome; cells grown in N2  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Quantifying Differential Expression and Identifying Bottlenecks in Methanogenic Pathways
Organism Methanosarcina acetivorans C2A
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
43  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000695
Organism Name
Methanosarcina acetivorans C2A  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOMICROBIA  
Genus
Methanosarcina  
Genus Synonyms
  
Species
Methanosarcina acetivorans  
Subspecies
  
Species Synonyms
  
Strain
C2A  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 35395  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.230  
Exemplar Name
Methanosarcina acetivorans  
Taxon DOI
10.1601/tx.230  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 188937
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanomicrobia  
NCBI Order
Methanosarcinales  
NCBI Family
Methanosarcinaceae  
NCBI Genus
Methanosarcina  
NCBI Species
Methanosarcina acetivorans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 124586
Genbank 16S ID M59137
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
35 - 40  
Salinity
  
pH
6.5 - 7  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Sediment
Hydrothermal vent
Oil fields
Metabolisms Methanogen
Phenotypes
  
Energy Sources Lithotroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?