PROJECT INFORMATION
GOLD Project ID
Gp0236090  
Project Name
Pecoramyces ruminatium C1A Transcriptome  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID 200719
NCBI BioProject Accession PRJNA200719
NCBI Locus Tag
  
NCBI BioSample Accession SAMN02981539
PI
Added By JGI automated process on 2017-08-31
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance Environmental
Sequencing Center Oklahoma State University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Transcriptome of Pecoramyces ruminatium C1A  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1030108  (Link to NCBI )
Experiment Title Orpinomyces C1A Composite Biomass transcriptome
Exp Library Strategy RNA_SEQ
Library Source TRANSCRIPTOMIC
Library Selection PolyA
Library Name Composite
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
PROJECT COMPOSITION
Study Pecoramyces ruminatium C1A Transcriptome
Organism Pecoramyces ruminatium C1A
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0014277
Organism Name
Pecoramyces ruminatium C1A  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-CHYTRIDIOMYCOTA  
Genus
Pecoramyces  
Genus Synonyms
  
Species
Pecoramyces ruminatium  
Subspecies
  
Species Synonyms
  
Strain
C1A  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1987568
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Chytridiomycota  
NCBI Class
Neocallimastigomycetes  
NCBI Order
Neocallimastigales  
NCBI Family
Neocallimastigaceae  
NCBI Genus
Pecoramyces  
NCBI Species
Pecoramyces ruminatium  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Filament-shaped  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Salinity
  
pH
7  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Gastrointestinal tract
Bovine rumen
Feces
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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