PROJECT INFORMATION
GOLD Project ID
Gp0225950  
Project Name
Aeropyrum pernix K1 transcriptome - Ape E  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Aeropyrum pernix K1 transcriptome - Ape E
NCBI BioProject ID 425658
NCBI BioProject Accession PRJNA425658
NCBI Locus Tag
  
NCBI BioSample Accession SAMN08221419
PI Todd Lowe
Added By JGI automated process on 2017-08-25
Last Modified By JGI automated process on 2020-04-05
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Aeropyrum pernix K1 transcriptome - Sample from exponentail phase  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Sequencing Archaeal Transcriptomes
Organism Aeropyrum pernix K1
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000767
Organism Name
Aeropyrum pernix K1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
CRENARCHAEOTA-THERMOPROTEI  
Genus
Aeropyrum  
Genus Synonyms
  
Species
Aeropyrum pernix  
Subspecies
  
Species Synonyms
  
Strain
K1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 700893  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.39  
Exemplar Name
Aeropyrum pernix  
Taxon DOI
10.1601/tx.39  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 272557
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Crenarchaeota  
NCBI Class
Thermoprotei  
NCBI Order
Desulfurococcales  
NCBI Family
Desulfurococcaceae  
NCBI Genus
Aeropyrum  
NCBI Species
Aeropyrum pernix  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 267839
Genbank 16S ID D83259
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Sphere-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Hyperthermophile  
Salinity
  
pH
5  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Hydrothermal vent
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph
Chemolithoautotroph

 

 

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