PROJECT INFORMATION
GOLD Project ID
Gp0220456  
Project Name
Soil crust associated fungal communities from Jackman Flats Provinical Park, British Columbia, Canada - Exophiala placitae JF2 08-2F  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Steven Harris
Added By JGI automated process on 2017-06-29
Last Modified By JGI automated process on 2019-09-08
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing to study fungal interaction with photoautotrophs in biological soil crusts  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Understanding fungal interaction networks in biological soil crusts
Biosample Soil crust associated fungal communities from Jackman Flats Provinical Park, British Columbia, Canada - Exophiala placitae JF2 08-2F
Analysis Projects Soil crust associated fungal communities from Jackman Flats Provinical Park, British Columbia, Canada - Exophiala placitae JF2 08-2F
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio Sequel II
Illumina HiSeq 2500-1TB
PacBio Sequel
Library Method (MIGS-28)
PacBio >10kb w/ AMPure Bead Size Selection, Tubes; Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
50  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Soil crust associated fungal communities from Jackman Flats Provinical Park, British Columbia, Canada - Exophiala placitae JF2 08-2F
Other Names (alias, synonyms, short names)
  
Sample Description
Soil crust associated fungal communities from Jackman Flats Provinical Park, British Columbia, Canada  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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