Studies
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49,818 |
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Biosamples
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146,892 |
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Sequencing Projects
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434,029 |
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Analysis Projects
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326,434 |
| Organisms | 417,209 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0214743
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Project Name
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Melampsora larici-populina 98AG31 S1 mapping population resequencing - A120
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Melampsora larici-populina 98AG31 S1 mapping population resequencing - A120 |
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NCBI BioProject ID
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403664 |
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NCBI BioProject Accession
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PRJNA403664 |
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NCBI Locus Tag
|
CL134
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NCBI BioSample Accession
|
SAMN07621918 |
| PI | Sebastien DUPLESSIS |
| Added By |
JGI automated process
on 2017-05-15 |
| Last Modified By |
JGI automated process
on 2019-11-04 |
| Project Comments |
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Project Status
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incomplete
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Resequencing of S1 offspring from Melampsora larici-populina 98AG31. This progeny was issued from a selfing cross of the sequenced reference isolate 98AG31, for this basidiospores of 98AG31 (different sexual types) mate on larch needles and then lead to the production of aeciospores that are dikaryotic
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| Is JGI Project |
Yes
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Resequencing
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| EXTERNAL PROJECT LINKS | |
| JGI Portal Download | Raw Sequence Data |
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Genome Publications
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Combined population genomics and transcriptomics to decipher the molecular bases of virulence and host adaptation in the poplar leaf rust fungus Melampsora larici-populina |
| Organism |
Melampsora larici-populina 98AG31 |
| Analysis Projects |
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| Number of Analysis Projects (AP) |
0 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500 |
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Library Method
(MIGS-28)
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Illumina Regular Fragment, 600bp, Plates
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
41
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0088810 |
| Organism Name |
Melampsora larici-populina 98AG31
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
EUKARYAL
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| Phylogeny |
FUNGI-BASIDIOMYCOTA
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| Genus |
Melampsora
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| Genus Synonyms |
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| Species |
Melampsora larici-populina
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| Subspecies |
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| Species Synonyms |
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| Strain |
98AG31
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
Unknown
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
203908 |
| NCBI Superkingdom |
Eukaryota
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| NCBI Kingdom |
Fungi
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| NCBI Phylum |
Basidiomycota
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| NCBI Class |
Pucciniomycetes
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| NCBI Order |
Pucciniales
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| NCBI Family |
Melampsoraceae
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| NCBI Genus |
Melampsora
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| NCBI Species |
Melampsora larici-populina
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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