PROJECT INFORMATION
GOLD Project ID
Gp0208458  
Project Name
Metatranscriptome of Brachypodium distachyon Bd18 inoculated with Cochliobolus sativus ND85F from North Dakota, USA - Bd18-1 ND85F 3D-1redo  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Brachypodium distachyon Bd18 inoculated with Cochliobolus sativus ND85F from North Dakota, USA - Bd18-1 ND85F 3D-1redo
NCBI BioProject ID 443714
NCBI BioProject Accession PRJNA443714
NCBI Locus Tag
C8N62  
NCBI BioSample Accession SAMN08777512
PI Gerrit H. Kema
Added By JGI automated process on 2017-03-10
Last Modified By JGI automated process on 2019-06-18
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Brachypodium distachyon Bd18 inoculated with Cochliobolus sativus ND85F  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Deciphering the Interactome of Dothideomycete-bioenergy crops
Biosample Brachypodium distachyon Bd18 inoculated with Cochliobolus sativus ND85F from North Dakota, USA - Bd18-1 ND85F 3D-1redo
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Brachypodium distachyon Bd18 inoculated with Cochliobolus sativus ND85F from North Dakota, USA - Bd18-1 ND85F 3D-1redo
Other Names (alias, synonyms, short names)
  
Sample Description
Metatranscriptome of Brachypodium distachyon Bd18 inoculated with Cochliobolus sativus ND85F  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1670606
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Phylloplane  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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