PROJECT INFORMATION
GOLD Project ID
Gp0208451  
Project Name
Metatranscriptome of Brachypodium distachyon Bd18 inoculated with Cochliobolus sativus ND4008 from North Dakota, USA - Bd18-1 ND4008 3D-3redo  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Brachypodium distachyon Bd18 inoculated with Cochliobolus sativus ND4008 from North Dakota, USA - Bd18-1 ND4008 3D-3redo
NCBI BioProject ID 443705
NCBI BioProject Accession PRJNA443705
NCBI Locus Tag
C8N54  
NCBI BioSample Accession SAMN08777296
PI Gerrit H. Kema
Added By JGI automated process on 2017-03-10
Last Modified By JGI automated process on 2020-04-04
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Brachypodium distachyon Bd18 inoculated with Cochliobolus sativus ND4013  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3893365  (Link to NCBI )
Experiment Title Cochliobolus sativus ND4008 - Brachypodium distachyon Bd18 Gene Expression Profiling
Exp Library Strategy OTHER
Library Source METATRANSCRIPTOMIC
Library Selection RT-PCR
Library Name BUAPY
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Deciphering the Interactome of Dothideomycete-bioenergy crops
Biosample Brachypodium distachyon Bd18 inoculated with Cochliobolus sativus ND4008 from North Dakota, USA - Bd18-1 ND4008 3D-3redo
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Brachypodium distachyon Bd18 inoculated with Cochliobolus sativus ND4008 from North Dakota, USA - Bd18-1 ND4008 3D-3redo
Other Names (alias, synonyms, short names)
  
Sample Description
Metatranscriptome of Brachypodium distachyon Bd18 inoculated with Cochliobolus sativus ND4013  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1670606
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Phyllosphere  
Ecosystem Subtype
Leaf  
Specific Ecosystem
  

 

 

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