PROJECT INFORMATION
GOLD Project ID
Gp0193957  
Project Name
Geogemma barossii 121  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID 356900
NCBI BioProject Accession PRJNA356900
NCBI Locus Tag
  
NCBI BioSample Accession SAMN06130132
PI Lucas Demey
Added By Lucas Demey on 2016-12-27
Last Modified By Supratim Mukherjee on 2019-02-26
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center Michigan State University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
High quality draft genome sequence of Geogemma barossii  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Geogemma barossii sequence and annotation
Organism Geogemma barossii 121
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
illumina paired-end  
Number Of Reads
>2 million  
Read Size
200-400 bp  
Vector
  
GC Percent
53  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0357229
Organism Name
Geogemma barossii 121  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
CRENARCHAEOTA  
Genus
Geogemma  
Genus Synonyms
  
Species
Geogemma barossii 121  
Subspecies
  
Species Synonyms
  
Strain
121  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 383690
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Crenarchaeota  
NCBI Class
Thermoprotei  
NCBI Order
Desulfurococcales  
NCBI Family
Pyrodictiaceae  
NCBI Genus
Geogemma  
NCBI Species
  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Black smokers  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Coccoid  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases
  
Known Habitats
  
Metabolisms Iron reducer
Phenotypes
  
Energy Sources Chemolithoautotroph

 

 

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