PROJECT INFORMATION
GOLD Project ID
Gp0177625  
Project Name
Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610
NCBI BioProject ID 406169
NCBI BioProject Accession PRJNA406169
NCBI Locus Tag
CNH21  
NCBI BioSample Accession SAMN07632078
PI Jeff Dangl
Added By JGI automated process on 2016-12-02
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Defining the functional diversity of the Arabidopsis rhizosphere microbiome  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations
Biosamples Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610
Analysis Projects Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Regular Fragment, 270bp  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610
Other Names (alias, synonyms, short names)
  
Sample Description
Defining the functional diversity of the Arabidopsis rhizosphere microbiome  
SAMPLE TAXONOMY
NCBI Taxonomy ID 939928
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Epiphytes  
Specific Ecosystem
  

 

 

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