PROJECT INFORMATION
GOLD Project ID
Gp0159441  
Project Name
Rhodotorula mucilaginosa ATCC 58901 Coumarate Gene Expression Profiling - 11  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Rhodotorula mucilaginosa ATCC 58901 Coumarate Gene Expression Profiling - 11
NCBI BioProject ID 444589
NCBI BioProject Accession PRJNA444589
NCBI Locus Tag
  
NCBI BioSample Accession SAMN08779499
PI John Gladden
Added By JGI automated process on 2016-10-08
Last Modified By JGI automated process on 2019-09-29
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Transcriptomic analysis of Rhodotorula mucilaginosa ATCC 58901 on Coumarate  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genome sequencing of aromatic compound degrading bacteria and fungi
Organism Rhodotorula mucilaginosa ATCC 58901
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0123484
Organism Name
Rhodotorula mucilaginosa ATCC 58901  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Rhodotorula  
Genus Synonyms
  
Species
Rhodotorula mucilaginosa  
Subspecies
  
Species Synonyms
  
Strain
ATCC 58901  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 58901  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 5537
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Microbotryomycetes  
NCBI Order
Sporidiobolales  
NCBI Family
Sporidiobolaceae  
NCBI Genus
Rhodotorula  
NCBI Species
Rhodotorula mucilaginosa  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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