PROJECT INFORMATION
GOLD Project ID
Gp0154682  
Project Name
Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898
NCBI BioProject ID 364693
NCBI BioProject Accession PRJNA364693
NCBI Locus Tag
BX999  
NCBI BioSample Accession SAMN06265031
PI Rick Cavicchioli
Added By JGI automated process on 2016-08-24
Last Modified By JGI automated process on 2020-04-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metagenomic analysis of microbial communities found in Antarctic aquatic environments  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Microbiome 6(1):113 Genomic variation and biogeography of Antarctic haloarchaea.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2526866  (Link to NCBI )
Experiment Title Antarctic Rauer Lake Metagenome Torckler E11 #898
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name BGYBS
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Saline lake microbial communities from various lakes in Antarctica
Biosample Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898
Analysis Projects Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898 (v2)
Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898
Number of Analysis Projects (AP)
2  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1647806
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Saline  
Specific Ecosystem
  

 

 

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