PROJECT INFORMATION
GOLD Project ID
Gp0150242  
Project Name
Rummeliibacillus stabekisii PP9  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Rummeliibacillus stabekisii PP9 genome sequencing
NCBI BioProject Accession PRJNA304612
NCBI Locus Tag
ATY39  
NCBI BioSample Accession SAMN04305282
PI
Added By JGI automated process on 2016-06-28
Last Modified By Hema Katta on 2018-01-19
Project Comments
  
Project Status
Complete and Published  
Project Relevance Industrial
Sequencing Center Federal University of Rio de Janeiro (Brazil)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Genome announcements Whole-Genome Sequence of Rummeliibacillus stabekisii Strain PP9 Isolated from Antarctic Soil.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX1628505  (Link to NCBI )
Experiment Title Rummeliibacillus stabekisii PP9 genome sequencing SMRT cells 1 and 2
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name PP9_genome_WGS_20Kb
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
Spot Length 0
PROJECT COMPOSITION
Study Rummeliibacillus stabekisii PP9 genome sequencing
Organism Rummeliibacillus stabekisii PP9
Analysis Projects Rummeliibacillus stabekisii PP9
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0144623
Organism Name
Rummeliibacillus stabekisii PP9  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Rummeliibacillus  
Genus Synonyms
  
Species
Rummeliibacillus stabekisii  
Subspecies
  
Species Synonyms
  
Strain
PP9  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 241244
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Bacillales  
NCBI Family
Planococcaceae  
NCBI Genus
Rummeliibacillus  
NCBI Species
Rummeliibacillus stabekisii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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