PROJECT INFORMATION
GOLD Project ID
Gp0149823  
Project Name
Cystobasidiopsis lactophilus JCM 7595  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Genome sequencing of Sporobolomyces lactophilus JCM 7595
NCBI BioProject ID 313839
NCBI BioProject Accession PRJDB3676
NCBI Locus Tag
JCM7595  
NCBI BioSample Accession SAMD00028396
PI
Added By JGI automated process on 2016-06-28
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center RIKEN (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
We perform genome sequencing of the important 100 eukaryotic microorganisms for the promotion of various studies. Sporobolomyces lactophilus JCM 7595 and its genomic DNA are available from RIKEN BRC-JCM.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id DRX029352  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 paired end sequencing of SAMD00028396
SRA Submission ID 2314544
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument Illumina HiSeq 2500
Spot Length 302
 
SRA Experiment Id DRX033271  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 paired end sequencing of SAMD00028396
SRA Submission ID 2314722
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument Illumina HiSeq 2500
Spot Length 302
PROJECT COMPOSITION
Study Genome sequencing of Sporobolomyces lactophilus JCM 7595
Organism Cystobasidiopsis lactophilus JCM 7595
Analysis Projects Cystobasidiopsis lactophilus JCM 7595
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0144226
Organism Name
Cystobasidiopsis lactophilus JCM 7595  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Cystobasidiopsis  
Genus Synonyms
  
Species
Cystobasidiopsis lactophilus  
Subspecies
  
Species Synonyms
  
Strain
JCM 7595  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
JCM 7595  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 5440
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Agaricostilbomycetes  
NCBI Order
Agaricostilbales  
NCBI Family
Chionosphaeraceae  
NCBI Genus
Cystobasidiopsis  
NCBI Species
Cystobasidiopsis lactophilus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?