PROJECT INFORMATION
GOLD Project ID
Gp0146784  
Project Name
Phycisphaerae bacterium SM-Chi-D1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Culture of Phycisphaerae bacterium SM-Chi-D1
NCBI BioProject ID
NCBI BioProject Accession PRJNA369380
NCBI Locus Tag
  
NCBI BioSample Accession SAMN06284589
PI Stefan Spring
Added By Stefan Spring on 2016-05-30
Last Modified By Supratim Mukherjee on 2017-07-28
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Helmholtz Centre for Infection Research (Germany)
Leibniz Institute (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
Diversity of of culturable prokaryotes in hypersaline microbial mats and sediments  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Diversity of culturable anaerobic prokaryotes in hypersaline microbial mats and sediments
Organism Phycisphaerae bacterium SM-Chi-D1
Analysis Projects Phycisphaerae bacterium SM-Chi-D1 reassembly
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS II
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0141498
Organism Name
Phycisphaerae bacterium SM-Chi-D1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PLANCTOMYCETES  
Genus
  
Genus Synonyms
  
Species
Phycisphaerae bacterium SM-Chi-D1  
Subspecies
  
Species Synonyms
  
Strain
SM-Chi-D1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1851148
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Planctomycetes  
NCBI Class
Phycisphaerae  
NCBI Order
  
NCBI Family
  
NCBI Genus
  
NCBI Species
Phycisphaerae bacterium SM-Chi-D1  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Hypersaline  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Coccoid  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
10%  
pH
6.5 - 7.0  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources Chemoheterotroph

 

 

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