PROJECT INFORMATION
GOLD Project ID
Gp0146022  
Project Name
Acidipropionibacterium acidipropionici ATCC 55737  
Other Names
Propionibacterium acidipropionici ATCC 55737  
Legacy GOLD ID
  
NCBI BioProject Name Propionibacterium acidipropionici strain:ATCC 55737
NCBI BioProject ID 310791
NCBI BioProject Accession PRJNA310791
NCBI Locus Tag
AXH35  
NCBI BioSample Accession SAMN04455717
PI
Added By JGI automated process on 2016-05-18
Last Modified By Hema Katta on 2018-01-18
Project Comments
  
Project Status
Complete and Published  
Project Relevance Industrial
Sequencing Center Australian Institute for Bioengineering and Nanotechnology
Collaborating Institute
  
Funding Agency
  
Project Description
Propionibacterium acidipropionici (P. acidipropionici) produces propionic acid (PA) as the main fermentation product along with other organic acids including acetic acid and succinic acid. Traditionally derived from fossil fuels, propionic acid is used as a food preservative amongst other uses. However, environmental and sustainable issues have revived interest in using P. acidipropionici to produce PA biologically. Here, we present the closed sequence of P. acidipropionici ATCC 55737, an efficient PA producer.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Genome Sequence of Propionibacterium acidipropionici ATCC 55737.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1562187  (Link to NCBI )
Experiment Title Project to sequence Propionibacterium acidipropionici ATCC 55737
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAC55737
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
Spot Length 0
 
SRA Experiment Id SRX1564529  (Link to NCBI )
Experiment Title Sequence Propionibacterium acidipropionici ATCC 55737
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAC55737
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
Spot Length 200
PROJECT COMPOSITION
Study Propionibacterium acidipropionici strain:ATCC 55737 Genome sequencing and assembly
Organism Acidipropionibacterium acidipropionici ATCC 55737
Analysis Projects Acidipropionibacterium acidipropionici ATCC 55737
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0140856
Organism Name
Acidipropionibacterium acidipropionici ATCC 55737  
Other names (alias, synonyms, short names, common names)
Propionibacterium acidipropionici ATCC 55737  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Acidipropionibacterium  
Genus Synonyms
Propionibacterium  
Species
Acidipropionibacterium acidipropionici  
Subspecies
  
Species Synonyms
  
Strain
ATCC 55737  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 55737  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1748
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Propionibacteriales  
NCBI Family
Propionibacteriaceae  
NCBI Genus
Acidipropionibacterium  
NCBI Species
Acidipropionibacterium acidipropionici  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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