PROJECT INFORMATION
GOLD Project ID
Gp0145296  
Project Name
Paeniglutamicibacter antarcticus W2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Draft genome of Arthrobacter antarcticus W2
NCBI BioProject ID 310451
NCBI BioProject Accession PRJEB9950
NCBI Locus Tag
BN2261  
NCBI BioSample Accession SAMEA3490269
PI
Added By JGI automated process on 2016-05-18
Last Modified By Hema Katta on 2018-03-27
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Natural History Museum of Denmark, University of Copenhagen
Collaborating Institute
  
Funding Agency
  
Project Description
Here we present a draft genome of Arthrobacter antarcticus W2. The strain was isolated from a wall in small Danish Slaughterhouse. We have in a recent publication shown how this strain can be involved in synergistic biofilm formation with other bacterial species isolated from the same environment. Genome sequencing libraries were prepared using the Nextera XT kit (Illumina, USA), according to the manufacturers recommendations, followed by sequencing as a part of the flowcell, as 2 250-base paired-end reads using the Illumina MiSeq (Illumina, USA) technology. The reads were cleaned and trimmed using CLC Genomics Workbench 7 (CLC bio, Denmark). Cleaned reads were assembled using SPAdes v 3.5.0. Obtained contigs were analyzed by VecScreen, to ensure no primer, phage or transposase contamination occurred in the contigs. Contigs smaller than 500bp were discarded.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Genome Sequence of Arthrobacter antarcticus Strain W2, Isolated from a Slaughterhouse.

Other Publications
  
SRA Experiment
 
SRA Experiment Id ERX1046208  (Link to NCBI )
Experiment Title Illumina MiSeq paired end sequencing
SRA Submission ID 2202225
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name unspecified
Library Layout PAIRED
Library Instrument Illumina MiSeq
PROJECT COMPOSITION
Study Draft genome of Arthrobacter antarcticus W2
Organism Paeniglutamicibacter antarcticus W2
Analysis Projects Paeniglutamicibacter antarcticus W2
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0140194
Organism Name
Paeniglutamicibacter antarcticus W2  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Paeniglutamicibacter  
Genus Synonyms
  
Species
Paeniglutamicibacter antarcticus  
Subspecies
  
Species Synonyms
  
Strain
W2  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 494023
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
Micrococcaceae  
NCBI Genus
Paeniglutamicibacter  
NCBI Species
Paeniglutamicibacter antarcticus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?