Studies
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47,488 |
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Biosamples
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121,419 |
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Sequencing Projects
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388,853 |
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Analysis Projects
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310,138 |
| Organisms | 403,380 |
| PROJECT INFORMATION | |||||||||||||||||||||
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GOLD Project ID
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Gp0145296
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Project Name
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Paeniglutamicibacter antarcticus W2
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Draft genome of Arthrobacter antarcticus W2 | ||||||||||||||||||||
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NCBI BioProject ID
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310451 |
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NCBI BioProject Accession
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PRJEB9950 |
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NCBI Locus Tag
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BN2261
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NCBI BioSample Accession
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SAMEA3490269 |
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| PI | |||||||||||||||||||||
| Added By |
JGI automated process
on 2016-05-18 |
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| Last Modified By |
Hema Katta
on 2018-03-27 |
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| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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Natural History Museum of Denmark, University of Copenhagen
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Collaborating Institute
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Funding Agency
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Project Description
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Here we present a draft genome of Arthrobacter antarcticus W2. The strain was isolated from a wall in small Danish Slaughterhouse. We have in a recent publication shown how this strain can be involved in synergistic biofilm formation with other bacterial species isolated from the same environment. Genome sequencing libraries were prepared using the Nextera XT kit (Illumina, USA), according to the manufacturers recommendations, followed by sequencing as a part of the flowcell, as 2 250-base paired-end reads using the Illumina MiSeq (Illumina, USA) technology. The reads were cleaned and trimmed using CLC Genomics Workbench 7 (CLC bio, Denmark). Cleaned reads were assembled using SPAdes v 3.5.0. Obtained contigs were analyzed by VecScreen, to ensure no primer, phage or transposase contamination occurred in the contigs. Contigs smaller than 500bp were discarded.
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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Project Information
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Database
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Genome Publications
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Genome announcements
Genome Sequence of Arthrobacter antarcticus Strain W2, Isolated from a Slaughterhouse.
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||
| Study |
Draft genome of Arthrobacter antarcticus W2 |
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| Organism |
Paeniglutamicibacter antarcticus W2 |
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| Analysis Projects |
Paeniglutamicibacter antarcticus W2 |
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| Number of Analysis Projects (AP) |
1
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
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| GOLD Organism ID |
Go0140194 |
| Organism Name |
Paeniglutamicibacter antarcticus W2
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
ACTINOBACTERIA
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| Genus |
Paeniglutamicibacter
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| Genus Synonyms |
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| Species |
Paeniglutamicibacter antarcticus
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| Subspecies |
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| Species Synonyms |
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| Strain |
W2
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
494023 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Actinobacteria
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| NCBI Class |
Actinobacteria
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| NCBI Order |
Micrococcales
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| NCBI Family |
Micrococcaceae
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| NCBI Genus |
Paeniglutamicibacter
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| NCBI Species |
Paeniglutamicibacter antarcticus
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
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| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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