PROJECT INFORMATION
GOLD Project ID
Gp0145171  
Project Name
Jeotgalibaca dankookensis CL-AS1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Jeotgalibaca dankookensis
NCBI BioProject ID 290873
NCBI BioProject Accession PRJDB4066
NCBI Locus Tag
JDA  
NCBI BioSample Accession SAMD00035447
PI
Added By JGI automated process on 2016-05-18
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Korea Polar Research Institute (KOPRI) (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
The genus Jeotgalibaca in the family Carnobacteriaceae was established with Jeotgalibaca dankookensis as the type species (Lee et al., 2014). The type strain (= KCCM 90229T) of J. dankookensis was isolated from salted and fermented shrimp (a traditional Korean seafood called seujeot in Korea). We isolated another strain CL-AS1 from alkaline and fermented skate (Raja pulchra) showing a high similarity of 99.9 % with the type strain of J. dankookensis in comparison of 16S rRNA gene sequences. Here, whole genome sequencing of the two strains was attempted to find intra-strain variation of genomes.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genome sequencing of two strains of Jeotgalibaca dankookensis
Organism Jeotgalibaca dankookensis CL-AS1
Analysis Projects Jeotgalibaca dankookensis CL-AS1
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0140073
Organism Name
Jeotgalibaca dankookensis CL-AS1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Jeotgalibaca  
Genus Synonyms
  
Species
Jeotgalibaca dankookensis  
Subspecies
  
Species Synonyms
  
Strain
CL-AS1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 708126
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Carnobacteriaceae  
NCBI Genus
Jeotgalibaca  
NCBI Species
Jeotgalibaca dankookensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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