Studies
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52,460 |
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Biosamples
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170,231 |
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Sequencing Projects
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472,495 |
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Analysis Projects
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360,348 |
| Organisms | 460,370 |
| PROJECT INFORMATION | |||||||||||||||||||||
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GOLD Project ID
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Gp0144617
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Project Name
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Shimia thalassica CECT 7735
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Shimia thalassica CECT 7735 | ||||||||||||||||||||
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NCBI BioProject Accession
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PRJEB10701 |
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NCBI Locus Tag
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PH7735
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NCBI BioSample Accession
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SAMEA3542137 |
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| PI | |||||||||||||||||||||
| Added By |
JGI automated process
on 2016-05-18 |
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| Last Modified By |
Supratim Mukherjee
on 2020-09-28 |
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| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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Spanish Type Culture Collection (CECT)
(Spain)
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Collaborating Institute
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Funding Agency
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Project Description
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Phaeobacter is a genus of the family Rhodobacteraceae described in 2006 by Martens et al. Genome sequencing of Phaeobacter sp. CECT 7735 was done using the Illumina MiSeq system by the Central Service of Support to Experimental Research (SCSIE) of the University of Valencia (Spain).
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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International Journal of Systematic and Evolutionary Microbiology
56(Pt 6):1293-304
Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera.
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||
| Study |
Whole genome sequencing of Phaeobacter sp. CECT 7735 |
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| Organism |
Shimia thalassica CECT 7735 |
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| Analysis Projects |
Shimia thalassica CECT 7735 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0139537 |
| Organism Name |
Shimia thalassica CECT 7735
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-ALPHA
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| Genus |
Shimia
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| Genus Synonyms |
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| Species |
Shimia thalassica
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| Subspecies |
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| Species Synonyms |
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| Strain |
CECT 7735
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1715693 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Proteobacteria
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| NCBI Class |
Alphaproteobacteria
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| NCBI Order |
Rhodobacterales
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| NCBI Family |
Roseobacteraceae
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| NCBI Genus |
Shimia
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| NCBI Species |
Shimia thalassica
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
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| Oxygen Requirement |
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| Temperature Range |
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| Salinity |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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