PROJECT INFORMATION
GOLD Project ID
Gp0137114  
Project Name
Candidatus Methylopumilus turicensis MMS-10A-171  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Freshwater Methylophilaceae isolates
NCBI BioProject ID 274466
NCBI BioProject Accession PRJEB7927
NCBI Locus Tag
BN1209  
NCBI BioSample Accession SAMEA3165956
PI Michaela Salcher
Added By Michaela Salcher on 2016-04-03
Last Modified By Supratim Mukherjee on 2016-04-25
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of Zurich (Switzerland)
Collaborating Institute
  
Funding Agency
  
Project Description
Complete genomes of novel freshwater isolates  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications The ISME journal The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Planktonic freshwater isolates
Organism Candidatus Methylopumilus turicensis MMS-10A-171
Analysis Projects Candidatus Methylopumilus turicensis MMS-10A-171
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
DNA was amplified with MDA prior to sequencing  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
TruSeq DNA PCR-Free LT Sample Preparation Kit, Illumina  
Number Of Reads
2388636  
Read Size
150  
Vector
  
GC Percent
45  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0114798
Organism Name
Candidatus Methylopumilus turicensis MMS-10A-171  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
  
Genus Synonyms
  
Species
Candidatus Methylopumilus turicensis MMS-10A-171  
Subspecies
  
Species Synonyms
  
Strain
MMS-10A-171  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1581680
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Nitrosomonadales  
NCBI Family
Methylophilaceae  
NCBI Genus
Candidatus Methylopumilus  
NCBI Species
Candidatus Methylopumilus turicensis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lentic  
Specific Ecosystem
Epilimnion  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?