PROJECT INFORMATION
GOLD Project ID
Gp0137007  
Project Name
Cronobacter dublinensis dublinensis LMG 23823  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Cronobacter
NCBI BioProject ID 291037
NCBI BioProject Accession PRJNA291037
NCBI Locus Tag
  
NCBI BioSample Accession SAMN03938717
PI Michelle Isbandi
Added By Michelle Isbandi on 2016-03-28
Last Modified By Hema Katta on 2019-01-14
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Nestle Research Center (France)
Collaborating Institute
  
Funding Agency
  
Project Description
Sequencing of Cronobater isolate coming from different reference bacterial collection using PacBio long reads sequencing technology to obtain complete genome that can be used as new reference genome  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Fully Closed Genome Sequences of Five Type Strains of the Genus Cronobacter and One Cronobacter sakazakii Strain.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1141373
Experiment Title Cronobacter dublinensis subsp. dublinensis LMG 23823 genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name Cronobacter dublinensis subsp. dublinensis LMG 23823
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
Spot Length 0
PROJECT COMPOSITION
Study Cronobacter Type Strains
Organism Cronobacter dublinensis dublinensis LMG 23823
Analysis Projects Cronobacter dublinensis dublinensis LMG 23823
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
PacBio 20kb  
Number Of Reads
  
Read Size
4444709  
Vector
  
GC Percent
  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0020600
Organism Name
Cronobacter dublinensis dublinensis LMG 23823  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Cronobacter  
Genus Synonyms
  
Species
Cronobacter dublinensis  
Subspecies
dublinensis  
Species Synonyms
  
Strain
LMG 23823  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
LMG 23823  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13805  
Exemplar Name
Cronobacter dublinensis dublinensis  
Taxon DOI
10.1601/tx.13805  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1159554
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Cronobacter  
NCBI Species
Cronobacter dublinensis  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Food production  
Ecosystem Type
Dairy products  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 823185
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes Catalase positive
Energy Sources
  

 

 

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