PROJECT INFORMATION
GOLD Project ID
Gp0130190  
Project Name
Companilactobacillus alimentarius DSM 20249  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Genomic characterization of the genus Lactobacillus
NCBI BioProject Accession PRJNA222257
NCBI Locus Tag
  
NCBI BioSample Accession SAMN02369426
PI
Added By JGI automated process on 2016-02-03
Last Modified By Mahathi Kandimalla on 2022-05-12
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center Shanghai Majorbio Bio-pharm Technology Co.
Collaborating Institute
  
Funding Agency
  
Project Description
Genomic characterization of the genus Lactobacillus  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Nature communications Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX456284  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Lactobacillus alimentarius DSM 20249
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name DSM_20249
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
PROJECT COMPOSITION
Study Expanding the biotechnology potential of lactobacilli through comparative genomics - Inner Mongolia Agricultural University
Organism Companilactobacillus alimentarius DSM 20249
Analysis Projects Companilactobacillus alimentarius DSM 20249
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0032831
Organism Name
Companilactobacillus alimentarius DSM 20249  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Companilactobacillus  
Genus Synonyms
  
Species
Companilactobacillus alimentarius  
Subspecies
  
Species Synonyms
  
Strain
R13  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 20249, ATCC 29643  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5329  
Exemplar Name
Lactobacillus alimentarius  
Taxon DOI
10.1601/tx.5329  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1423720
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Companilactobacillus  
NCBI Species
Companilactobacillus alimentarius  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Food production  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?