PROJECT INFORMATION
GOLD Project ID
Gp0130184  
Project Name
Lentilactobacillus buchneri DSM 20057  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Genomic characterization of the genus Lentilactobacillus
NCBI BioProject ID 222257
NCBI BioProject Accession PRJNA222257
NCBI Locus Tag
  
NCBI BioSample Accession SAMN02369438
PI
Added By JGI automated process on 2016-02-03
Last Modified By Supratim Mukherjee on 2020-10-28
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center Shanghai Majorbio Bio-pharm Technology Co.
Collaborating Institute
  
Funding Agency
  
Project Description
Genomic characterization of the genus Lentilactobacillus  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Nature communications Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX456296  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Lactobacillus buchneri DSM 20057
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name DSM_20057
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
PROJECT COMPOSITION
Study Expanding the biotechnology potential of lactobacilli through comparative genomics - Inner Mongolia Agricultural University
Organism Lentilactobacillus buchneri DSM 20057
Analysis Projects Lentilactobacillus buchneri DSM 20057
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0043596
Organism Name
Lentilactobacillus buchneri DSM 20057  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lentilactobacillus  
Genus Synonyms
  
Species
Lentilactobacillus buchneri  
Subspecies
  
Species Synonyms
  
Strain
DSM 20057  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 20057, ATCC 4005  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5340  
Exemplar Name
Lactobacillus buchneri  
Taxon DOI
10.1601/tx.5340  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1423728
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Lentilactobacillus  
NCBI Species
Lentilactobacillus buchneri  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Tomato
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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