PROJECT INFORMATION
GOLD Project ID
Gp0126994  
Project Name
Rudaeicoccus suwonensis DSM 19560  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Rudaeicoccus suwonensis DSM 19560
NCBI BioProject ID 347153
NCBI BioProject Accession PRJNA347153
NCBI Locus Tag
BKA23  
NCBI BioSample Accession SAMN05877996
PI Hans-Peter Klenk
Added By JGI automated process on 2016-01-07
Last Modified By JGI automated process on 2020-08-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Exploiting the genomes of the Actinobacteria: plant growth promoters and producers of natural products and energy relevant enzymes united in a taxonomically unresolved phylum  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5781219  (Link to NCBI )
Experiment Title Rudaeicoccus suwonensis DSM 19560
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GCPTO
Library Layout SINGLE
 
SRA Experiment Id SRX5781220  (Link to NCBI )
Experiment Title Rudaeicoccus suwonensis DSM 19560
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GCPTO
Library Layout SINGLE
PROJECT COMPOSITION
Study Sequencing the genomes of 1000 actinobacteria strains
Organism Rudaeicoccus suwonensis DSM 19560
Analysis Projects Rudaeicoccus suwonensis DSM 19560
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio Sequel
PacBio RS II
Library Method (MIGS-28)
PacBio 6-10kb w/ Blue Pippin Size Selection, Tubes; PacBio Multiplexed 10kb, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0043953
Organism Name
Rudaeicoccus suwonensis DSM 19560  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Rudaeicoccus  
Genus Synonyms
  
Species
Rudaeicoccus suwonensis  
Subspecies
  
Species Synonyms
  
Strain
DSM 19560  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 19560  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.23980  
Exemplar Name
Rudaeicoccus suwonensis  
Taxon DOI
10.1601/tx.23980  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 657409
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
Dermacoccaceae  
NCBI Genus
Rudaeicoccus  
NCBI Species
Rudaeicoccus suwonensis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID GQ241687
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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