PROJECT INFORMATION
GOLD Project ID
Gp0123726  
Project Name
Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean - CN11_C50_N6_SortRC_1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean - CN11_C50_N6_SortRC_1
NCBI BioProject Accession PRJNA375251
NCBI Locus Tag
B1V62  
NCBI BioSample Accession SAMN06343783
PI Alexandra Worden
Added By JGI automated process on 2015-10-28
Last Modified By JGI automated process on 2021-11-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Population metagenomics of uncultured photosynthetic marine eukaryotes  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome - Cell Enrichment  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000681
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX2933124  (Link to NCBI )
Experiment Title Uncultured metagenome CN11_C50_N6_SortRC_1
Exp Library Strategy OTHER
Library Source METAGENOMIC
Library Selection RANDOM
Library Name ATTYO
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean, that are photosynthetic
Biosample Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean - CN11_C50_N6_SortRC_1
Analysis Projects Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean - CN11_C50_N6_SortRC_1
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Production RnD, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean - CN11_C50_N6_SortRC_1
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 408172
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
  

 

 

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