Studies
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52,459 |
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Biosamples
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170,246 |
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Sequencing Projects
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472,604 |
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Analysis Projects
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359,688 |
| Organisms | 460,469 |
| PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0122425
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Project Name
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Shinella sp. SUS2
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Shinella sp. SUS2 | ||||||||||||||||||
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NCBI BioProject Accession
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PRJNA291349 |
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NCBI Locus Tag
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AKG11
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NCBI BioSample Accession
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SAMN03943231 |
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| PI | |||||||||||||||||||
| Added By |
JGI automated process
on 2015-10-15 |
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| Last Modified By |
Supratim Mukherjee
on 2017-03-29 |
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| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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University of Exeter
(Ireland)
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Collaborating Institute
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Funding Agency
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Project Description
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Genome sequencing of alga-associated bacteria
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Genome announcements
Draft Genome Sequences of Achromobacter piechaudii GCS2, Agrobacterium sp. Strain SUL3, Microbacterium sp. Strain GCS4, Shinella sp. Strain GWS1, and Shinella sp. Strain SUS2 Isolated from Consortium with the Hydrocarbon-Producing Alga Botryococcus braunii.
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Genome sequencing of alga-associated bacteria |
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| Organism |
Shinella sp. SUS2 |
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| Analysis Projects |
Shinella sp. SUS2 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina MiSeq |
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Library Method
(MIGS-28)
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Illumina 150bp
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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7005767
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0117485 |
| Organism Name |
Shinella sp. SUS2
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-ALPHA
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| Genus |
Shinella
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| Genus Synonyms |
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| Species |
Shinella sp. SUS2
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| Subspecies |
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| Species Synonyms |
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| Strain |
SUS2
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1692241 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Proteobacteria
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| NCBI Class |
Alphaproteobacteria
|
| NCBI Order |
Hyphomicrobiales
|
| NCBI Family |
Rhizobiaceae
|
| NCBI Genus |
Shinella
|
| NCBI Species |
Shinella sp. SUS2
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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