PROJECT INFORMATION
GOLD Project ID
Gp0119518  
Project Name
Lampropedia cohaerens CT6  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID 282900
NCBI BioProject Accession PRJNA282900
NCBI Locus Tag
AAV94  
NCBI BioSample Accession SAMN03580769
PI Charu Tripathi
Added By Charu Tripathi on 2015-07-24
Last Modified By Hema Katta on 2019-01-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center BGI Tech Solutions Co., Ltd.
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of an organism isolated from microbial mats of a hot water spring at Manikaran, India  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Standards in genomic sciences 11(1):64 Draft genome sequence of Lampropedia cohaerens strain CT6(T) isolated from arsenic rich microbial mats of a Himalayan hot water spring.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Lampropedia cohaerens genome
Organism Lampropedia cohaerens CT6
Analysis Projects Lampropedia cohaerens CT6
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 1000
Library Method (MIGS-28)
2kb, 500bp  
Number Of Reads
13,421,144  
Read Size
90  
Vector
  
GC Percent
63  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0115524
Organism Name
Lampropedia cohaerens CT6  
Other names (alias, synonyms, short names, common names)
CT6  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Lampropedia  
Genus Synonyms
  
Species
Lampropedia cohaerens  
Subspecies
  
Species Synonyms
  
Strain
CT6  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM100029  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.28279  
Exemplar Name
Lampropedia cohaerens  
Taxon DOI
10.1601/tx.28279  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1610491
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Comamonadaceae  
NCBI Genus
Lampropedia  
NCBI Species
Lampropedia cohaerens  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Rock-dwelling (subaerial biofilms)  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Thermotolerant  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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