Studies
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56,010 |
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Biosamples
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183,990 |
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Sequencing Projects
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508,072 |
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Analysis Projects
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381,498 |
| Organisms | 480,512 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0118143
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Project Name
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Persicobacter sp. CCB-QB2
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Persicobacter sp. CCB-QB2 |
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NCBI BioProject Accession
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PRJNA263536 |
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NCBI Locus Tag
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NG22
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NCBI BioSample Accession
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SAMN03103716 |
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Source Sample ID
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| PI | Unknown |
| Added By | JGI automated process on 2015-07-02 |
| Last Modified By | Supratim Mukherjee on 2017-03-29 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Environmental |
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Sequencing Center
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University of Science, Malaysia
(Malaysia)
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Collaborating Institute
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Funding Agency
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Project Description
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Agars are major components of the cell walls of red algae, and they are consisting of 3,6-anhydro-l-galactoses, D-galactoses and L-galactoses. Many bacteria that were isolated from marine environment were characterized with the ability to hydrolyze and metabolize agar as carbon and energy sources. These agarolytic microorganisms usually produce agarases, the enzymes that are responsible for the hydrolysis of agar. Recently, there are numerous researches on the possible applications of agarases in the production of oligosaccharides for nutraceutical uses. A locally isolated Persicobacter sp. was found to exhibit agar-degrading property. The genome sequences are important for the identification of underlying pathways for the production of valuable enzyme e.g. agarases in the bacterium.
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| Is JGI Project |
No
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Persicobacter sp. CCB-QB2 Genome sequencing |
| Organism |
Persicobacter sp. CCB-QB2 |
| Analysis Projects |
Persicobacter sp. CCB-QB2 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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PacBio RS |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0114371 |
| Organism Name |
Persicobacter sp. CCB-QB2
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
BACTEROIDETES
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| Genus |
Persicobacter
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| Genus Synonyms |
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| Species |
Persicobacter sp. CCB-QB2
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| Subspecies |
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| Species Synonyms |
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| Strain |
CCB-QB2
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1561025 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Bacteroidota
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| NCBI Class |
Cytophagia
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| NCBI Order |
Cytophagales
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| NCBI Family |
Persicobacteraceae
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| NCBI Genus |
Persicobacter
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| NCBI Species |
Persicobacter sp. CCB-QB2
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
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| Oxygen Requirement |
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| Motility |
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| Salinity |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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