Studies
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41,043 |
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Biosamples
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86,333 |
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Sequencing Projects
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322,421 |
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Analysis Projects
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269,305 |
| Organisms | 372,122 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0117885
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Project Name
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Geobacter soli GSS01
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Geobacter soli |
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NCBI BioProject ID
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271628 |
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NCBI BioProject Accession
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PRJNA271628 |
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NCBI Locus Tag
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SE37
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NCBI BioSample Accession
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SAMN03275688 |
| PI | |
| Added By |
JGI automated process
on 2015-07-02 |
| Last Modified By |
Supratim Mukherjee
on 2017-03-29 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Model Organism |
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Sequencing Center
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Guangdong Institute of Eco-Environmental and Soil Sciences
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Collaborating Institute
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Funding Agency
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Project Description
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Strain Geobacter soli GSS01 represents a novel species of the genus Geobacter, which can conserve energy for growth while coupling the reduction of amorphous ferric oxide ferrihydrite to the oxidation of acetate. The genome sequencing will be helpful to search the electron transfer mechanism in this strain that may differ from other published species.
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| Is JGI Project |
No
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Project Information Visibility
|
Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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Project Information
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Database
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Genome Publications
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Geobacter soli strain:GSS01 Genome sequencing |
| Organism |
Geobacter sp. GSS01 |
| Analysis Projects |
Geobacter soli GSS01 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Sequencing Comments
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq |
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Library Method
(MIGS-28)
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0109592 |
| Organism Name |
Geobacter sp. GSS01
|
| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-DELTA
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| Genus |
Geobacter
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| Genus Synonyms |
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| Species |
Geobacter soli
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| Subspecies |
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| Species Synonyms |
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| Strain |
GSS01
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
Unknown
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| Exemplar DOI |
10.1601/ex.26007
|
| Exemplar Name |
Geobacter soli
|
| Taxon DOI |
10.1601/tx.26007
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| Biosafety Level |
|
| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1510391 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Proteobacteria
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| NCBI Class |
Deltaproteobacteria
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| NCBI Order |
Desulfuromonadales
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| NCBI Family |
Geobacteraceae
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| NCBI Genus |
Geobacter
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| NCBI Species |
Geobacter soli
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
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| Ecosystem Category |
Unclassified
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| Ecosystem Type |
Unclassified
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| Ecosystem Subtype |
Unclassified
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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