PROJECT INFORMATION
GOLD Project ID
Gp0117692  
Project Name
Devosia subaequoris HST3-14  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Devosia subaequoris
NCBI BioProject ID 279512
NCBI BioProject Accession PRJNA279512
NCBI Locus Tag
WH89  
NCBI BioSample Accession SAMN03448625
PI
Added By JGI automated process on 2015-07-02
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Agriculture and Agri-Food Canada (Canada)
Collaborating Institute
  
Funding Agency
  
Project Description
Here we report the de novo genome assembly of an environmentally related Devosia species: Devosia subaequaris Strain HST3-14 that was obtained as a marine bacterium from beach sediment samples taken at a depth of 1.5 m below the surface in Jeju, Republic of Korea (Lee, 2007).  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Devosia subaequoris strain:HST3-14 Genome sequencing
Organism Devosia subaequoris HST3-14
Analysis Projects Devosia subaequoris HST3-14
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0113998
Organism Name
Devosia subaequoris HST3-14  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Devosia  
Genus Synonyms
  
Species
Devosia subaequoris  
Subspecies
  
Species Synonyms
  
Strain
HST3-14  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.11402  
Exemplar Name
Devosia subaequoris  
Taxon DOI
10.1601/tx.11402  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 395930
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Hyphomicrobiaceae  
NCBI Genus
Devosia  
NCBI Species
Devosia subaequoris  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?