PROJECT INFORMATION
GOLD Project ID
Gp0114709  
Project Name
Actinoalloteichus sp. GBA129-24 Genome sequencing  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Actinoalloteichus GBA129-24 Genome sequencing and assembly
NCBI BioProject Accession PRJNA275159
NCBI Locus Tag
UA75  
NCBI BioSample Accession SAMN03339751
PI Christian Rückert
Added By Christian Rückert on 2015-04-28
Last Modified By Supratim Mukherjee on 2020-03-17
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Center for Biotechnology (CeBiTec), Bielefeld Univeristy (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
Complete genome sequence of Actinoalloteichus sp. GBA129-24, isolated from the marine sponge Geodia barretti  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications International Journal of Systematic and Evolutionary Microbiology 56(Pt 10):2309-12 Actinoalloteichus hymeniacidonis sp. nov., an actinomycete isolated from the marine sponge Hymeniacidon perleve.

SRA Experiment
  
PROJECT COMPOSITION
Study Comparative genomics of Actinoalloteichus species genomes
Organism Actinoalloteichus sp. GBA129-24
Analysis Projects Actinoalloteichus sp. GBA129-24 Genome sequencing
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
TruSeq PCR-free, 6kb Nextera MatePair  
Library Layout
  
Library Screening Method
  
Number Of Reads
4169978 Illumina MiSeq  
Read Size
2x 300bp  
Vector
  
GC Percent
70  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0112388
Organism Name
Actinoalloteichus sp. GBA129-24  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Actinoalloteichus  
Genus Synonyms
  
Species
Actinoalloteichus sp.  
Subspecies
  
Species Synonyms
  
Strain
GBA129-24  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 65496
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinomycetia  
NCBI Order
Pseudonocardiales  
NCBI Family
Pseudonocardiaceae  
NCBI Genus
Actinoalloteichus  
NCBI Species
  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Porifera  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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