PROJECT INFORMATION
GOLD Project ID
Gp0110584  
Project Name
Desulfobacula phenolica DSM 3384  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Desulfobacula phenolica DSM 3384
NCBI BioProject ID 303295
NCBI BioProject Accession PRJNA303295
NCBI Locus Tag
ATF82  
NCBI BioSample Accession SAMN04487931
PI Eric Collins
Added By JGI automated process on 2015-02-25
Last Modified By JGI automated process on 2020-09-17
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Unraveling the Genetic Basis of an Ancient Geochemical Biomarker  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2136723  (Link to NCBI )
Experiment Title Desulfobacula phenolica DSM 3384
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ANUCX
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Unraveling the Genetic Basis of an Ancient Geochemical Biomarker
Organism Desulfobacula phenolica DSM 3384
Analysis Projects Desulfobacula phenolica DSM 3384
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina MiSeq
PacBio RS II
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0015880
Organism Name
Desulfobacula phenolica DSM 3384  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Desulfobacula  
Genus Synonyms
  
Species
Desulfobacula phenolica  
Subspecies
  
Species Synonyms
  
Strain
DSM 3384  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 3384  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3558  
Exemplar Name
Desulfobacula phenolica  
Taxon DOI
10.1601/tx.3562  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 90732
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Desulfobacterales  
NCBI Family
Desulfobacteraceae  
NCBI Genus
Desulfobacula  
NCBI Species
Desulfobacula phenolica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AJ237606
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Mud
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?