Studies
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52,459 |
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Biosamples
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170,240 |
|
Sequencing Projects
|
472,573 |
|
Analysis Projects
|
359,686 |
| Organisms | 460,438 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0107537
|
|
Project Name
|
Streptomonospora alba YIM 90003
|
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Other Names
|
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Legacy ER Project ID
|
79341
|
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Legacy GOLD ID
|
Gi0079341
|
| NCBI BioProject Name | Streptomonospora alba |
|
NCBI BioProject Accession
|
PRJNA261521 |
|
NCBI Locus Tag
|
LP52
|
|
NCBI BioSample Accession
|
SAMN03074668 |
| PI | |
| Added By |
JGI automated process
on 2014-10-02 |
| Last Modified By |
Supratim Mukherjee
on 2017-03-29 |
| Project Comments |
|
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Project Status
|
Permanent Draft
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Project Relevance
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Evolution |
|
Sequencing Center
|
University of Illinois, Urbana-Champaign
(USA)
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Collaborating Institute
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Funding Agency
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Project Description
|
Sequencing of Streptomonospora alba aims to identify the biosynthetic genes responsible for the production of novel lasso peptide. Also this is the first genome sequence of a member of genus Streptomonospora.
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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Chem. Biol.
22(2):241-50
Structure, bioactivity, and resistance mechanism of streptomonomicin, an unusual lasso Peptide from an understudied halophilic actinomycete.
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Streptomonospora alba YIM 90003 Genome sequencing |
| Organism |
Streptomonospora alba YIM 90003 |
| Analysis Projects |
Streptomonospora alba YIM 90003 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
|
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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|
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0107537 |
| Organism Name |
Streptomonospora alba YIM 90003
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ACTINOBACTERIA
|
| Genus |
Streptomonospora
|
| Genus Synonyms |
|
| Species |
Streptomonospora alba
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| Subspecies |
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| Species Synonyms |
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| Strain |
YIM 90003
|
| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
YIM 90003
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.7558
|
| Exemplar Name |
Streptomonospora alba
|
| Taxon DOI |
10.1601/tx.7558
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| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
183763 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Actinobacteria
|
| NCBI Class |
Actinomycetia
|
| NCBI Order |
Streptosporangiales
|
| NCBI Family |
Nocardiopsaceae
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| NCBI Genus |
Streptomonospora
|
| NCBI Species |
Streptomonospora alba
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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