Studies
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41,042 |
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Biosamples
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86,332 |
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Sequencing Projects
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322,403 |
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Analysis Projects
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267,970 |
| Organisms | 372,105 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0102116
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Project Name
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Endocarpon pallidulum Enpa
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Other Names
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Legacy ER Project ID
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76889
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Legacy GOLD ID
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Gi0076889
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| NCBI BioProject Name | Endocarpon pallidulum strain:Enpa |
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NCBI BioProject ID
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256243 |
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NCBI BioProject Accession
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PRJNA256243 |
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NCBI Locus Tag
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NCBI BioSample Accession
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| PI | |
| Added By |
JGI automated process
on 2014-08-08 |
| Last Modified By | |
| Project Comments |
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Project Status
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incomplete
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Project Relevance
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Evolution |
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Sequencing Center
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Duke University
(USA)
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Collaborating Institute
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Funding Agency
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Project Description
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A lichen is a symbiotic association of a fungus and a photosynthesizing partner, such as a green algae or cyanobacterium. The symbiosis is usually obligate for the fungus. The goal of this study was to generate genome information for phylogenetic analysis from the cultured mycobionts (lichenizing fungi) and lichen thalli spanning the diversity of lichenized groups in the classes Lecanoromycetes, Eurotiomycetes, and Dothidiomycetes. Endocarpon pallidulum is a lichenizing fungus in the class Eurotiomycetes, subclass Chaetothyriomycetidae.
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| Is JGI Project |
No
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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Project Information
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Database
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Genome Publications
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Genome sequencing of lichenizing fungi to assess gene loss - Duke University |
| Organism |
Endocarpon pallidulum Enpa |
| Analysis Projects |
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| Number of Analysis Projects |
0 |
| Number of DAPs |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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In progress |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Sequencing Comments
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0102116 |
| Organism Name |
Endocarpon pallidulum Enpa
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
EUKARYAL
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| Phylogeny |
FUNGI-ASCOMYCOTA
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| Genus |
Endocarpon
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| Genus Synonyms |
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| Species |
Endocarpon pallidulum
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| Subspecies |
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| Species Synonyms |
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| Strain |
Enpa
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
Unknown
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
396380 |
| NCBI Superkingdom |
Eukaryota
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| NCBI Kingdom |
Fungi
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| NCBI Phylum |
Ascomycota
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| NCBI Class |
Eurotiomycetes
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| NCBI Order |
Verrucariales
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| NCBI Family |
Verrucariaceae
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| NCBI Genus |
Endocarpon
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| NCBI Species |
Endocarpon pallidulum
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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