JGI GOLD | Project

PROJECT INFORMATION
GOLD Project ID	Gp0102110
Project Name	Holospora obtusa F1
Other Names
Legacy ER Project ID	76883
Legacy GOLD ID	Gi0076883
NCBI BioProject Name	Draft Genome Sequence of Holospora obtusa Strain F1, a macronucleus-speci¿c symbiont of the ciliate Paramecium caudatum
NCBI BioProject ID	247288
NCBI BioProject Accession	PRJDB2719
NCBI Locus Tag
NCBI BioSample Accession
PI
Added By	JGI automated process on 2014-08-08
Last Modified By
Project Comments
Project Status	incomplete
Project Relevance
Sequencing Center	Shizuoka University
Collaborating Institute
Funding Agency
Project Description	Holospora obtusa is a macronucleus-specific symbiont of the ciliate Paramecium caudatum. Here, we report the draft genome sequence of H. obtusa strain F1. The genome information will contribute to the study of symbiosis between H. obtusa and the host P. caudatum.
Is JGI Project	No
Project Information Visibility	Public
PROJECT TYPE
Specimen	Organism
Nucleic Acid	DNA
Sequencing Strategy	Whole Genome Sequencing
EXTERNAL PROJECT LINKS
Project Information
Database
Genome Publications
Other Publications
SRA Experiment
PROJECT COMPOSITION
Study	Draft Genome Sequence of Holospora obtusa Strain F1, a macronucleus-speci¿c symbiont of the ciliate Paramecium caudatum
Organism	Holospora obtusa F1
Analysis Projects
Number of Analysis Projects (AP)	0
Number of Derived Analyis Projects (DAP)	0

SEQUENCING INFORMATION
Sequencing Status	In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
DNA Amplification Method
Sequencing Comments
DNA Amplification Kit
Sequencing Technology (MIGS-29)
Library Method (MIGS-28)
Library Layout
Library Screening Method
Number Of Reads
Read Size
Vector
GC Percent
Chromosome Count
Plasmid Count

ORGANISM NAME
GOLD Organism ID	Go0047942
Organism Name	Holospora obtusa F1
Other names (alias, synonyms, short names, common names)
Organism Domain	BACTERIAL
Phylogeny	PROTEOBACTERIA-ALPHA
Genus	Holospora
Genus Synonyms
Species	Holospora obtusa
Subspecies
Species Synonyms
Strain	F1
Strain Synonyms
Serovar/Cultivar
Culture Collection ID
Type Strain	Unknown
Exemplar DOI
Exemplar Name
Taxon DOI
Biosafety Level
Organism Comments
Cultured	Yes
Culture Type	Isolate
Organism Type	Natural
Uncultured Type
Commercial Strain
Commercial Strain Comments
ORGANISM TAXONOMY
NCBI Taxonomy ID	1399147
NCBI Superkingdom	Bacteria
NCBI Kingdom
NCBI Phylum	Proteobacteria
NCBI Class	Alphaproteobacteria
NCBI Order	Holosporales
NCBI Family	Holosporaceae
NCBI Genus	Holospora
NCBI Species	Holospora obtusa
ISOLATION CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID

GENERAL PROPERTIES
Oxygen Requirement
Cell Shape
Motility
Sporulation
Temperature Range
Salinity
pH
Cell Diameter
Cell Length
Color
Gram Staining
Biotic Relationships
Symbiotic Physical Interaction
Symbiotic Relationship
Symbiont Name
Symbiont Taxon ID
Cell Arrangements
Diseases
Known Habitats
Metabolisms
Phenotypes
Energy Sources

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