Studies
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52,461 |
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Biosamples
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170,231 |
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Sequencing Projects
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472,496 |
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Analysis Projects
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350,474 |
| Organisms | 459,889 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0102110
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Project Name
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Holospora obtusa F1
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Other Names
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Legacy ER Project ID
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76883
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Legacy GOLD ID
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Gi0076883
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| NCBI BioProject Name | Draft Genome Sequence of Holospora obtusa Strain F1, a macronucleus-speci¿c symbiont of the ciliate Paramecium caudatum |
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NCBI BioProject Accession
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PRJDB2719 |
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NCBI Locus Tag
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NCBI BioSample Accession
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| PI | |
| Added By |
JGI automated process
on 2014-08-08 |
| Last Modified By | |
| Project Comments |
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Project Status
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incomplete
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Project Relevance
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Sequencing Center
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Shizuoka University
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Collaborating Institute
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Funding Agency
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Project Description
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Holospora obtusa is a macronucleus-specific symbiont of the ciliate Paramecium caudatum. Here, we report the draft genome sequence of H. obtusa strain F1. The genome information will contribute to the study of symbiosis between H. obtusa and the host P. caudatum.
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| Is JGI Project |
No
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Draft Genome Sequence of Holospora obtusa Strain F1, a macronucleus-speci¿c symbiont of the ciliate Paramecium caudatum |
| Organism |
Holospora obtusa F1 |
| Analysis Projects |
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| Number of Analysis Projects (AP) |
0 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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In progress |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0047942 |
| Organism Name |
Holospora obtusa F1
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-ALPHA
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| Genus |
Holospora
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| Genus Synonyms |
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| Species |
Holospora obtusa
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| Subspecies |
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| Species Synonyms |
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| Strain |
F1
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
Unknown
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1399147 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Proteobacteria
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| NCBI Class |
Alphaproteobacteria
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| NCBI Order |
Holosporales
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| NCBI Family |
Holosporaceae
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| NCBI Genus |
Holospora
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| NCBI Species |
Holospora obtusa
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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