PROJECT INFORMATION
GOLD Project ID
Gp0094950  
Project Name
Rubrivivax gelatinosus CBS CBS  
Other Names
  
Legacy ER Project ID
74183  
Legacy GOLD ID
Gi0074183  
NCBI BioProject Name Rubrivivax gelatinosus CBS
NCBI BioProject Accession PRJNA246247
NCBI Locus Tag
EP32  
NCBI BioSample Accession
PI
Added By JGI automated process on 2014-05-22
Last Modified By Jyothi Mallajosyula on 2014-05-22
Project Comments
  
Project Status
incomplete  
Project Relevance Environmental
Sequencing Center Michigan State University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Rubrivivax gelatinosus CBS was originally isolated from soils in Denver, Colorado. It is a purple non-sulfur (PNS) photosynthetic bacterium belonging to the family of Rhodospirillaceae. Similar to most PNS in this family, Rx. gelatinosus is versatile with various modes of growth and energy metabolism. It carries out anoxygenic photosynthesis using electrons derived from organic acids and energy from sunlight, aerobic respiration using organic acids, and N2 fixation to ammonium in support of cell growth. Moreover, upon exposure to carbon monoxide (CO) in the culture gas phase, two Rx. gelatinosus strains, i.e., CBS and S1 can both carry out a water-gas shift reaction according to the equation CO + H2O ? CO2 + H2. The products CO2 and H2 are then assimilated into new cell mass either in the light or in darkness. The latter growth mode in darkness could use CO as the sole carbon substrate hence coupling CO oxidation to energy generation via a mechanism yet to be resolved.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications Journal of bacteriology 194(12):3262 Draft genome sequence of Rubrivivax gelatinosus CBS.

SRA Experiment
  
PROJECT COMPOSITION
Study Rubrivivax gelatinosus CBS Genome sequencing using SMRT Sequencing
Organism Rubrivivax gelatinosus CBS
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0020507
Organism Name
Rubrivivax gelatinosus CBS  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Rubrivivax  
Genus Synonyms
  
Species
Rubrivivax gelatinosus  
Subspecies
  
Species Synonyms
  
Strain
CBS  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 28068
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
  
NCBI Genus
Rubrivivax  
NCBI Species
Rubrivivax gelatinosus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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