PROJECT INFORMATION
GOLD Project ID
Gp0087949  
Project Name
Lachnoclostridium aminophilum F  
Other Names
  
Legacy ER Project ID
70815  
Legacy GOLD ID
Gi0070815  
NCBI BioProject Name [Clostridium] aminophilum strain:F
NCBI BioProject ID 254907
NCBI BioProject Accession PRJNA254907
NCBI Locus Tag
IE67  
NCBI BioSample Accession SAMN02910262
PI William Kelly
Added By JGI automated process on 2014-02-20
Last Modified By JGI automated process on 2019-09-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2052560  (Link to NCBI )
Experiment Title Clostridium aminophilum F
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name XYHY
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.
Organism Lachnoclostridium aminophilum F
Analysis Projects Lachnoclostridium aminophilum F
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013480
Organism Name
Lachnoclostridium aminophilum F  
Other names (alias, synonyms, short names, common names)
Clostridium aminophilum F  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lachnoclostridium  
Genus Synonyms
Clostridium  
Species
Lachnoclostridium aminophilum  
Subspecies
  
Species Synonyms
  
Strain
F  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 10710  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3891  
Exemplar Name
Clostridium aminophilum  
Taxon DOI
10.1601/tx.3891  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121296
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Lachnospiraceae  
NCBI Genus
Lachnoclostridium  
NCBI Species
[Clostridium] aminophilum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Foregut  
Specific Ecosystem
Rumen  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 162132
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
1 um  
Cell Length
1.5 um  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Bovine
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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