PROJECT INFORMATION
GOLD Project ID
Gp0086862  
Project Name
Mucispirillum schaedleri ASF457  
Other Names
  
Legacy ER Project ID
69903  
Legacy GOLD ID
Gi0069903  
NCBI BioProject Name Mucispirillum schaedleri ASF457
NCBI BioProject Accession PRJNA213740
NCBI Locus Tag
N508  
NCBI BioSample Accession SAMN02297858
Source Sample ID
PI Unknown
Added By JGI automated process on 2014-02-14
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Mouse Models Colitis  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications Genome announcements: Draft genome sequences of the altered schaedler flora, a defined bacterial community from gnotobiotic mice.
PubMed: 24723722 DOI: 10.1128/genomeA.00287-14
SRA Experiment
 
SRA Experiment Id SRX332193  (Link to NCBI )
Experiment Title Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-153783' containing sample Mucispirillum schaedleri ASF457
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Solexa-153783
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX332194  (Link to NCBI )
Experiment Title Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-237128' containing sample Mucispirillum schaedleri ASF457
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Pond-237128
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
PROJECT COMPOSITION
Study Mucispirillum schaedleri ASF457
Organism Mucispirillum schaedleri ASF457
Analysis Projects Mucispirillum schaedleri ASF457
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
31  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0014266
Organism Name
Mucispirillum schaedleri ASF457  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
DEFERRIBACTERES  
Genus
Mucispirillum  
Genus Synonyms
  
Species
Mucispirillum schaedleri  
Subspecies
  
Species Synonyms
  
Strain
ASF457  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1379858
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Deferribacteres  
NCBI Class
Deferribacteres  
NCBI Order
Deferribacterales  
NCBI Family
Mucispirillaceae  
NCBI Genus
Mucispirillum  
NCBI Species
Mucispirillum schaedleri  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Spiral-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Endosymbiotic extracellular  
Symbiotic Relationship
Commensal  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Host
Gut
Mouse Gut
Metabolisms
  
Phenotypes Nonvirulent
Energy Sources Heterotroph

 

 

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