Studies
|
52,460 |
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Biosamples
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170,231 |
|
Sequencing Projects
|
472,495 |
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Analysis Projects
|
360,348 |
| Organisms | 460,370 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0075752
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Project Name
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Dermabacter hominis NBRC 106157
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Other Names
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Legacy ER Project ID
|
64632
|
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Legacy GOLD ID
|
Gi0064632
|
| NCBI BioProject Name | Dermabacter hominis NBRC 106157 |
|
NCBI BioProject Accession
|
PRJDB1334 |
|
NCBI Locus Tag
|
DEHOM01
|
|
NCBI BioSample Accession
|
SAMD00046478 |
| PI | |
| Added By |
JGI automated process
on 2014-01-14 |
| Last Modified By |
Supratim Mukherjee
on 2017-03-29 |
| Project Comments |
|
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Project Status
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Permanent Draft
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Project Relevance
|
Environmental |
|
Sequencing Center
|
National Institute of Technology and Evaluation
(Japan)
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Collaborating Institute
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Funding Agency
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Project Description
|
The NBRC Whole Genome Shotgun Project aims to provide "reference genomes" of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for understanding the structure and evolution of microbial genomes. One of our goals is to sequence 2,000 representative strains in the NBRC culture collection. The sequence information will be released to the society through the NBRC web site (http://www.bio.nite.go.jp/ngac/e/project_wgs-e.html) and DDBJ/EMBL/GeneBank databases.
|
| Is JGI Project |
No
|
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Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Dermabacter hominis NBRC 106157 |
| Organism |
Dermabacter hominis NBRC 106157 |
| Analysis Projects |
Dermabacter hominis NBRC 106157 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
|
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 1000 |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0075752 |
| Organism Name |
Dermabacter hominis NBRC 106157
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ACTINOBACTERIA
|
| Genus |
Dermabacter
|
| Genus Synonyms |
|
| Species |
Dermabacter hominis
|
| Subspecies |
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| Species Synonyms |
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| Strain |
NBRC 106157
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
NBRC 106157
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.5978
|
| Exemplar Name |
Dermabacter hominis
|
| Taxon DOI |
10.1601/tx.5978
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
|
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ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1349750 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
|
| NCBI Phylum |
Actinobacteria
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| NCBI Class |
Actinomycetia
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| NCBI Order |
Micrococcales
|
| NCBI Family |
Dermabacteraceae
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| NCBI Genus |
Dermabacter
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| NCBI Species |
Dermabacter hominis
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Host Skin |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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| CYANOBACTERIA METADATA | |
| Filaments |
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| Filament Type |
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| Differentiated Cells |
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| Position Of Heterocysts |
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| Cysts |
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| Mode Of Reproduction |
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| Trichome |
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| Trichome Type |
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| Carotenoids |
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| Pigments |
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| Phage Infectivity |
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| Phage Type |
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| Restriction Enzyme |
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| Toxin Production |
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| Toxin Type |
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| Secondary Metabolites |
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| Developmental Cycle |
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| Branching |
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| Gas Vesicles |
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| Gas Vesicle Type |
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| Diagnostic Inclusion Body Information |
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| Extracellular Structures |
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| Bloom Forming |
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| Pigment Type |
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| Complementary chromatic adaptation (CCA) |
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| Medium Types |
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