PROJECT INFORMATION
GOLD Project ID
Gp0060559  
Project Name
Streptococcus sobrinus DSM 20742  
Other Names
  
Legacy ER Project ID
58481  
Legacy GOLD ID
Gi0058481  
NCBI BioProject Name Streptococcus sobrinus DSM 20742 = ATCC 33478
NCBI BioProject ID 234798
NCBI BioProject Accession PRJNA234798
NCBI Locus Tag
BS63  
NCBI BioSample Accession SAMN02743354
PI Nikos Kyrpides
Added By JGI automated process on 2013-11-14
Last Modified By JGI automated process on 2019-09-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Nature biotechnology 35(7):676-683 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1761318  (Link to NCBI )
Experiment Title Streptococcus sobrinus DSM 20742
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TSWZ
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Organism Streptococcus sobrinus DSM 20742
Analysis Projects Streptococcus sobrinus DSM 20742
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
43  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013358
Organism Name
Streptococcus sobrinus DSM 20742  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Streptococcus  
Genus Synonyms
  
Species
Streptococcus sobrinus  
Subspecies
  
Species Synonyms
  
Strain
SL1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 20742  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5687  
Exemplar Name
Streptococcus sobrinus  
Taxon DOI
10.1601/tx.5687  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1123317
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Streptococcaceae  
NCBI Genus
Streptococcus  
NCBI Species
Streptococcus sobrinus  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral cavity  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 33026
Genbank 16S ID NR_042773
GENERAL PROPERTIES
Oxygen Requirement
Microaerophilic  
Cell Shape
Coccus-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
0.5 um  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Chains
Diseases
  
Known Habitats Host
Human
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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