PROJECT INFORMATION
GOLD Project ID
Gp0054942  
Project Name
Biogas fermentation microbial communities from Germany - Plant 4 RNA2  
Other Names
  
Legacy ER Sample ID
24505  
Legacy GOLD ID
Gs0004046  
NCBI BioProject Name Biogas fermentation microbial communities from Germany - Plant 4 RNA2
NCBI BioProject ID 361155
NCBI BioProject Accession PRJNA361155
NCBI Locus Tag
BWK97  
NCBI BioSample Accession SAMN06226878
PI Alexander Sczyrba
Added By JGI automated process on 2013-09-06
Last Modified By JGI automated process on 2020-04-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2501908  (Link to NCBI )
Experiment Title Biogas Plant 4 RNA2
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RT-PCR
Library Name OTTT
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Biogas fermentation microbial communities from biogas plants in Germany
Biosample Biogas fermentation microbial communities from Germany - Plant 4 RNA2
Analysis Projects Biogas fermentation microbial communities from Germany - Plant 4 RNA2 (Metagenome Metatranscriptome)
Biogas fermentation microbial communities from Germany - Plant 4 RNA2 (Metagenome Metatranscriptome Expression - Other)
Biogas fermentation microbial communities from Germany - Plant 4 RNA2 (Metagenome Metatranscriptome Expression - Self)
Number of Analysis Projects (AP)
3  
Number of Derived Analyis Projects (DAP)
1  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina RNASeq w/rRNA Depletion, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
44  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Biogas fermentation microbial communities from Germany - Plant 4 RNA2
Other Names (alias, synonyms, short names)
  
Sample Description
Biogas plant fermentation sample  
SAMPLE TAXONOMY
NCBI Taxonomy ID 718289
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Biotransformation  
Ecosystem Type
Mixed alcohol bioreactor  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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