PROJECT INFORMATION
GOLD Project ID
Gp0053702  
Project Name
Soil microbial communities from Rifle, Colorado, USA - 2008 BG 13ft  
Other Names
  
Legacy ER Sample ID
1223  
Legacy GOLD ID
Gs0005987  
NCBI BioProject Name Soil microbial communities from Rifle, Colorado, USA - 2008 BG 13ft
NCBI BioProject ID 330071
NCBI BioProject Accession PRJNA330071
NCBI Locus Tag
BCH71  
NCBI BioSample Accession SAMN05421554
PI Jill Banfield
Added By Ionna Pagani on 2012-02-08
Last Modified By JGI automated process on 2020-04-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications "Science (New York, N.Y.)" Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla.

Environmental microbiology 18(1):159-73 Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2021635  (Link to NCBI )
Experiment Title Rifle 2008 BG 13ft
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name INGN
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX1987163  (Link to NCBI )
Experiment Title Rifle 2008 BG 13ft
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name NCWW
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2021633  (Link to NCBI )
Experiment Title Rifle 2008 BG 13ft
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name INGN
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2021634  (Link to NCBI )
Experiment Title Rifle 2008 BG 13ft
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name INGN
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Soil microbial communities from Rifle, Colorado, USA
Biosample Soil microbial communities from Rifle, Colorado, USA - 2008 BG 13ft
Analysis Projects Soil microbial communities from Rifle, Colorado, USA - 2008 BG 13ft
Soil microbial communities from Rifle, Colorado, USA - 2008 BG 13ft
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Soil microbial communities from Rifle, Colorado, USA - 2008 BG 13ft
Other Names (alias, synonyms, short names)
  
Sample Description
Background, unstimulated sediment, collected from 13 feet deep at well D04, Rifle, CO  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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