PROJECT NAME
GOLD Project ID
Gp0052036  
Project Name
Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, original sample replicate 2  
Other Names
  
Legacy ER Sample ID
10581  
Legacy GOLD ID
Gs0000606  
NCBI BioProject Name Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, original sample replicate 2
NCBI BioProject ID 336802
NCBI BioProject Accession
PRJNA336802  
NCBI Locus Tag
BEX35  
NCBI BioSample Accession
SAMN05518066  
PI Ludmila Chistoserdova
Added By Susannah Tringe on 2010-11-04
Last Modified By Ioanna Pagani on 2012-01-17
Project Comments
  
PROJECT TYPE
Specimen Biome
Nucleic Acid
  
Sequencing Strategy
Metagenome  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications PeerJ A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles
Biosamples Freshwater ecosystem from Lake Washington, Seattle
Analysis Projects Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, original sample replicate 2
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Library Method (MIGS-28)
454 Titanium  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Freshwater ecosystem from Lake Washington, Seattle
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 556182
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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