PROJECT NAME
GOLD Project ID
Gp0052035  
Project Name
Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, original sample replicate 1  
Other Names
  
Legacy ER Sample ID
10580  
Legacy GOLD ID
Gs0000605  
NCBI BioProject Name Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, original sample replicate 1
NCBI BioProject ID 336801
NCBI BioProject Accession
PRJNA336801  
NCBI Locus Tag
BEX34  
NCBI BioSample Accession
SAMN05518067  
PI Lumila Chistoserdova
Added By Susannah Tringe on 2010-11-04
Last Modified By Ioanna Pagani on 2013-07-29
Project Comments
  
PROJECT TYPE
Specimen Biome
Nucleic Acid
  
Sequencing Strategy
Metagenome  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications PeerJ A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles
Biosamples Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, original sample replicate 1
Analysis Projects Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, original sample replicate 1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Library Method (MIGS-28)
454 Titanium  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
57  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, original sample replicate 1
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 556182
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lentic  
Specific Ecosystem
Sediment  

 

 

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