PROJECT NAME
GOLD Project ID
Gp0052030  
Project Name
Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0  
Other Names
  
Legacy ER Sample ID
10584  
Legacy GOLD ID
Gs0000942  
NCBI BioProject Name Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0
NCBI BioProject ID 336798
NCBI BioProject Accession
PRJNA336798  
NCBI Locus Tag
BEX31  
NCBI BioSample Accession
SAMN05518068  
PI Susannah Tringe
Added By Susannah Tringe on 2010-11-12
Last Modified By Ioanna Pagani on 2013-07-29
Project Comments
  
PROJECT TYPE
Specimen Biome
Nucleic Acid
  
Sequencing Strategy
Metagenome  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency National Science Foundation (NSF) (USA)
U.S. Department of Energy (DOE) (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Nature 488(7409):86-90 Defining the core Arabidopsis thaliana root microbiome.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Arabidopsis rhizosphere microbial communities from the University of North Carolina
Biosamples Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0
Analysis Projects Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0
Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0
Col-0 rhizosphere combined assembly
Combined assembly of cpr5 and col0 rhizosphere and soil
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAii
Library Method (MIGS-28)
454-titanium and paired-end Illumina  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 939928
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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