PROJECT NAME
GOLD Project ID
Gp0051590  
Project Name
Activated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Visp-2009 (Newbler)  
Other Names
  
Legacy ER Sample ID
10331  
Legacy GOLD ID
Gs0000099  
NCBI BioProject Name
  
NCBI BioProject ID
  
NCBI BioProject Accession
  
NCBI Locus Tag
  
NCBI BioSample Accession
  
PI Susannah Tringe
Added By on 2010-01-20
Last Modified By JGI automated process on 2012-01-31
Project Comments
  
PROJECT TYPE
Specimen Biome
Nucleic Acid
  
Sequencing Strategy
Metagenome  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications The ISME journal 7(6):1173-86 Community-wide plasmid gene mobilization and selection.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Activated sludge microbial communities from Commune de Morges, Switzerland
Biosamples Activated sludge ecosystem from Visp, Switzerland
Analysis Projects Activated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Visp-2009 (Newbler)
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Dideoxysequencing
Library Method (MIGS-28)
short-insert  
Number Of Reads
79008  
Read Size
  
Vector
pUC18  
GC Percent
60  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Activated sludge ecosystem from Visp, Switzerland
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 527639
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Nutrient removal  
Ecosystem Subtype
Dissolved organics (aerobic)  
Specific Ecosystem
Activated sludge  

 

 

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