PROJECT NAME
GOLD Project ID
Gp0051558  
Project Name
Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - from flow sorted anaerobic plus nitrate  
Other Names
  
Legacy ER Sample ID
10264  
Legacy GOLD ID
Gs0000601  
NCBI BioProject Name Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - from flow sorted anaerobic plus nitrate
NCBI BioProject ID 336967
NCBI BioProject Accession
PRJNA336967  
NCBI Locus Tag
BEZ00  
NCBI BioSample Accession
SAMN05518543  
PI Ludmila Chistoserdova
Added By Nikos Kyrpides on 2009-09-12
Last Modified By Ioanna Pagani on 2012-01-17
Project Comments
  
PROJECT TYPE
Specimen Biome
Nucleic Acid
  
Sequencing Strategy
Metagenome  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications PeerJ A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles
Biosamples Freshwater ecosystem from Lake Washington, Seattle, Washington, USA
Analysis Projects Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - from flow sorted anaerobic plus nitrate
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Library Method (MIGS-28)
454 titanium  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
46  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Freshwater ecosystem from Lake Washington, Seattle, Washington, USA
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 556182
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lentic  
Specific Ecosystem
  

 

 

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