PROJECT INFORMATION
GOLD Project ID
Gp0051510  
Project Name
Hypersaline microbial communities from Antarctic Deep Lake - 24m 0.8um  
Other Names
  
Legacy ER Sample ID
10248  
Legacy GOLD ID
Gs0000585  
NCBI BioProject Name Hypersaline microbial communities from Antarctic Deep Lake, sample 24m 0.8um
NCBI BioProject Accession PRJNA337715
NCBI Locus Tag
BE648  
NCBI BioSample Accession SAMN05518722
PI Rick Cavicchioli
Added By Nikos Kyrpides on 2009-09-09
Last Modified By Supratim Mukherjee on 2018-07-12
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 110(42):16939-44 High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Hypersaline microbial communities from Antarctic Deep Lake
Biosample Hypersaline microbial communities from Antarctic Deep Lake - 24m 0.8um
Analysis Projects Hypersaline microbial communities from Antarctic Deep Lake - 24m 0.8um
Hypersaline microbial communities from Antarctic Deep Lake - 24m 0.8um
Hypersaline microbial communities from Antarctic Deep Lake - 24m 0.8um - spades
Number of Analysis Projects (AP) 3
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
Paired-end Illumina  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Hypersaline microbial communities from Antarctic Deep Lake - 24m 0.8um
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 904678
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Hypersaline  
Specific Ecosystem
  

 

 

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