PROJECT NAME
GOLD Project ID
Gp0051350  
Project Name
Green-waste compost microbial community at University of California, Davis, USA, from solid state bioreactor - Inoculum 16S MiniPCR  
Other Names
  
Legacy ER Sample ID
190  
Legacy GOLD ID
Gs0000753  
NCBI BioProject Name Green-waste compost microbial community at University of California, Davis, USA, from solid state bioreactor - Inoculum 16S MiniPCR
NCBI BioProject ID 337661
NCBI BioProject Accession
PRJNA337661  
NCBI Locus Tag
BE594  
NCBI BioSample Accession
SAMN05518520  
PI Phil Hugenholtz
Added By Martin Allgaier on 2008-12-19
Last Modified By Michelle Isbandi on 2014-02-18
Project Comments
two quarter plates of 454-FLX-Titanium were sequenced  
PROJECT TYPE
Specimen Biome
Nucleic Acid
  
Sequencing Strategy
Metagenome  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute DOE Joint Bioenergy Institute (JBEI) (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications PloS one 5(1):e8812 Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Green-waste compost microbial community at University of California, Davis, USA, from solid state bioreactor
Biosamples Green-waste compost microbial community at University of California, Davis, USA, from solid state bioreactor - Inoculum 16S MiniPCR
Analysis Projects Green-waste compost microbial community at University of California, Davis, USA, from solid state bioreactor - Inoculum 16S MiniPCR
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
two quarter plates of 454-FLX-Titanium  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
58  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Green-waste compost microbial community at University of California, Davis, USA, from solid state bioreactor - Inoculum 16S MiniPCR
Other Names (alias, synonyms, short names)
  
Sample Description
Grover Soil Solutions compost facility in Zamora, CA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 702656
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Solid waste  
Ecosystem Type
Composting  
Ecosystem Subtype
Grass  
Specific Ecosystem
Bioreactor  

 

 

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