PROJECT NAME
GOLD Project ID
Gp0051219  
Project Name
Soil microbial communities from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene -196  
Other Names
  
Legacy ER Sample ID
196  
Legacy GOLD ID
Gs0000448  
NCBI BioProject Name Soil microbial communities from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene -196
NCBI BioProject ID 337104
NCBI BioProject Accession
PRJNA337104  
NCBI Locus Tag
BE037  
NCBI BioSample Accession
SAMN05518705  
PI Eoin Brodie
Added By Susannah Tringe on 2009-01-23
Last Modified By Michelle Isbandi on 2014-12-16
Project Comments
Contaminated soil bioreactor sample  
PROJECT TYPE
Specimen Biome
Nucleic Acid
  
Sequencing Strategy
Metagenome  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications The ISME journal 6(9):1702-14 Metagenomic analysis of a stable trichloroethene-degrading microbial community.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene
Biosamples Bioreactor ecosystem from Alameda Naval Air Station, Alameda, CA
Analysis Projects Soil microbial communities from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene -196
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
52  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Bioreactor ecosystem from Alameda Naval Air Station, Alameda, CA
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Bioremediation  
Ecosystem Type
Tetrachloroethylene and derivatives  
Ecosystem Subtype
Chloroethene  
Specific Ecosystem
Bioreactor  

 

 

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