PROJECT NAME
GOLD Project ID
Gp0051058  
Project Name
Mouse gut microbial communities from Washington University in St Louis, Missouri, USA - Lean Mouse 2 Gut Metagenome  
Other Names
  
Legacy ER Sample ID
10063  
Legacy GOLD ID
Gs0000137  
NCBI BioProject Name
  
NCBI BioProject ID 17393
NCBI BioProject Accession
  
NCBI Locus Tag
  
NCBI BioSample Accession
  
PI Human Gut Community Users
Added By Nikos Kyrpides on 2007-12-04
Last Modified By Ioanna Pagani on 2013-07-29
Project Comments
The included ORFs were predicted using YACOP with the following options: combinate_multi -gc -c -z -concat  
PROJECT TYPE
Specimen Biome
Nucleic Acid
  
Sequencing Strategy
Metagenome  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance
  
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Nature An obesity-associated gut microbiome with increased capacity for energy harvest.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Mouse gut microbial communities from Washington University in St Louis, Missouri, USA, of lean and obese mice
Biosamples Mouse gut microbial communities from Washington University in St Louis, Missouri, USA - Lean Mouse 2 Gut Metagenome
Analysis Projects Mouse gut microbial communities from Washington University in St Louis, Missouri, USA - Lean Mouse 2 Gut Metagenome
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
52  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Mouse gut microbial communities from Washington University in St Louis, Missouri, USA - Lean Mouse 2 Gut Metagenome
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Cecum  

 

 

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